Bursting the Viral Capsid

This is a speculative method for bursting open assembled viral capsids, even those inside a human cell, in order to destroy the virion.

It has been calculated that, for many viruses, the internal pressure inside the capsid is around 60 atmospheres. The viral DNA is squeezed in so tightly that it actually assumes a crystalline form. References: 1 2

Immediate thoughts that come to my mind are:

(a) Can we somehow further raise this internal pressure, so as to burst the capsid?
(b) And, if so, at what pressure will the capsid burst?

The answer to (b) is known: a capsid will certainly burst at when the pressure inside it is 100 atmospheres greater than that outside. This data comes from calculation on the standard method of rupturing capsids, osmotic shock. References: 1

OK, so how can we raise the pressure inside the capsid in vivo, so that it ruptures? Osmotic shock is probably out, since it is unlikely that we can radically alter salt and solute levels in the body, and even if we could, the osmotic shock generated might cause the rupture healthy cells rather than capsids.

What about heat? Can we somehow apply heat to the crystalline DNA within the capsid? If the crystalline DNA were electrically conductive, then the application of an electromagnetic field would induce eddy currents within the capsid, which would heat up the DNA, thus raising the capsid internal pressure, which at a certain point will precipitate rupture. But crystalline DNA is probably not sufficiently electrically conductive. However, it might be possible to somehow dope the crystalline DNA with some material to turn it into a semiconductor, much in the same way that silicon crystals are turned into semiconducting transistors by adding a doping chemical (usually Boron).

Assuming it is possible to make crystalline DNA semiconductive, then the application of a suitable electromagnetic field (eg: radiofrequency waves) to a virally infected patient would then heat up the (now conducting) DNA inside all the viral capsids in his body, raising the capsids’ internal pressures and rupturing them. This will effective destroy all the virions in vivo.

The problem is how to dope the DNA so as to make it electrically conductive or semiconductive. One trick might be to develop a nucleoside analog that modifies the DNA such that when the DNA assumes crystalline form (and only then), this DNA becomes semiconductive. Thus, once this nucleoside analog is given to the patient, the viral DNA (but not the nuclear DNA) in his body becomes semiconductive, and thus an externally applied electromagnetic field may be able to heat it, and so rapidly burst the virions inside his body.

Perhaps there are other ways of transferring heat to the crystalline DNA in the capsid interior? Are there any materials scientists with crystallography expertise than may offer a suggestion?

Alternatively, how about this: could a nucleoside analog be developed that operates normally during regular human cellular functioning, such as cell division and replication, but automatically disintegrates the DNA as soon as conditions of high pressure, such the 60 atmospheres found within the viral capsid, are encountered? With such pressure-sensitive DNA molecular disintegration, very few viable virions would be produced. More importantly, this type of nucleoside analog would serve as a universal antiviral, working for any DNA virus that has these high pressures inside their capsids.

These ideas are offered to stimulate the imagination. I hope they inspire further lateral thinking, so that you may come up with some more creative, practicable methods on eliminating viruses from the body.

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5 Comments on “Bursting the Viral Capsid”

  1. vip Says:

    i have gone through both papers referred and i feel it might just work, but i do not understand the dope part, how can we dope a dna within a capsid, when the viral dna is released only into the cell, as it is said in reference 1.
    the concept also does not take into account, of how it is possible to protect our own dna from the current.

    if all this is possible is it possible to apply the same prinicple to rna viruses both ssrna and dsrna.

    i am new in this field, so if my questions seem vague please excuse my knowledge, and would really like to know more about it.

    REPLY: Many thanks you for your comments. The spirit of the idea is to discover some feature of viruses that is not present anywhere else in the body, so that this feature can be targeted as a means of viral destruction whilst leaving the rest of the body intact. The ‘bursting the capsid’ concept follows this logic, and is based on two facts: (1) that DNA is held within the capsid at a high pressure of around 60 atmospheres, which, if you approximately double, will cause the capsid to burst; and (2) due to this pressure, DNA apparently changes into a crystalline structure (that is, becomes a regular geometric lattice of molecules) inside the capsid. The capsid interior is the only place where DNA is pressurised and in crystalline form, as far as I am aware. Thus, if only the crystalline DNA is made electrically conductive, then ordinary nuclear DNA will be left unaffected by any electromagnetic heating radiation applied to the patient, since ordinary DNA is normally pretty non-conductive electrically.

    Remember, this is just a loose idea which may or may not be practicable. It is just offered to stimulate the imagination and inspire lateral and creative thinking about killing viruses. It is the spirit of the idea that is important, as are variations on its theme.

    As an example of a variation, the above idea may not work as it stands, but, sensitising the capsid DNA to a different type of energy (such as an oscillating magnetic field instead of and electromagnetic field) may succeed, provided the capsid crystalline DNA can be selectively sensitised into absorbing this energy, and that the resulting heating of the capsid DNA is sufficient to raise the capsid’s internal pressure to bursting point.

    Another variation on the idea might focus on heating the capsid itself, rather than its DNA, by somehow modifying its protein structure to absorb electromagnetic energy. This should also raise the interior pressure.

    Note: This idea will probably not work for destroying RNA viruses, because they are not packed under high pressure.

  2. R. Macary Says:

    Does the crystal DNA have a mechanical resonant frequency?

    REPLY: Thanks for your comment. Crystals do exhibit mechanical vibration, called ‘lattice vibrations’, which oscillate at frequencies of anything up to 10 Terahertz. In fact, the possibility of crystalline DNA lattice vibrations, and their utilisation for viral destruction, is the subject of a post coming soon. Reference: 1

  3. M. Engel Says:

    Why do you think bursting all of the virions inside a human being at the same time is a good idea at all? To me, this wounds like a terrible idea as releasing massive quantities of viral DNA invivo at the same instant would cause any patient to go into shock with a terrible immune response. Sorry, but very creative thinking.

    REPLY: Good point. However, if this shock reaction were problematic, one could change the procedure (reduce the electromagnetic power, for example) so as to burst the virions in vivo more slowly, over many hours say.

  4. M. Engel Says:

    However you are still releasing viral dna/rna into the cells and this is still toxic. besides, the dna may still be transported into the nucleus by the cell machinery and expressed into functional proteins, thereby undoing your process. if the virus contained rna which was re released in the cytoplasm, viral proteins could be expressed from here allowing the virus to continue infection.

    REPLY: I take your point. However, if cell contains a lot of virions, the chances are the cell has already been hijacked by the virus’ genetic payload anyway, and it may be advantageous to ‘poison’ the cell in this way. There are also alternatives approaches that avoid this issue: it might be possible to heat-destroy the viral crystalline DNA without bursting the capsid, rendering the virion harmless, without spilling its guts.

  5. Matthew Engel Says:

    I thought this was interesting: nanotechnology virucides.

    REPLY: NanoVirucides…. very intriguing indeed.


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